patternogram.Rd
It creates a patternogram or a patternogram cloud. The function takes a raster object of class SpatRaster
or a point vector object of class sf
as input, and calculates the dissimilarity between values of pairs of points given the distances between them. The output of this function is a tibble of the patternogram class that can be visualized with the plot()
and autoplot()
functions.
patternogram(
x,
cutoff,
width = cutoff/15,
dist_fun = "euclidean",
sample_size = 100,
cloud = FALSE,
target = NULL,
...
)
A raster object of class SpatRaster (terra) or a point vector object of class sf (sf)
Spatial distance up to which point pairs are included in patternogram estimates; by default: a square root of the raster area
The width of subsequent distance intervals for which data point pairs are grouped for patternogram estimates
Distance measure used. This function uses the philentropy::distance()
function (run philentropy::getDistMethods()
to find possible distance measures)
Only used when x
is raster. Proportion of the cells inside of each region to be used in calculations. Value between 0 and 1. It is also possible to specify an integer larger than 1, in which case the specified number of cells of each region will be used in calculations.
Logical; if TRUE, calculate the patternogram cloud
Additional argument allowing to calculate separate estimates for different categories or ranges of values
Additional arguments for base::cut()
A tibble of the patternogram class with columns, such as (a) np - the number of point pairs in this estimate, (b) dist - the middle of the distance interval used for each estimate, (c) dissimilarity - the dissimilarity estimate, (d) (optional) target
r = terra::rast(system.file("ex/elev.tif", package = "terra"))
pr = patternogram(r)
pr
#> # A tibble: 15 × 3
#> np dist dissimilarity
#> * <int> <dbl> <dbl>
#> 1 129 2300 34.6
#> 2 326 6895 51.3
#> 3 459 11495 61.3
#> 4 554 16100 66.3
#> 5 541 20700 67.3
#> 6 530 25300 69.9
#> 7 495 29900 73.7
#> 8 501 34500 84.9
#> 9 414 39100 100.
#> 10 294 43700 106.
#> 11 237 48300 112.
#> 12 181 52900 125.
#> 13 123 57450 139.
#> 14 88 62000 132.
#> 15 41 66600 137.
plot(pr)